Institutes
| State Key Laboratory of Membrane Biology | Director Li Yu |
| National Engineering Research Center for Protein Technology | Director Yongzhang Luo |
| The Ministry of Education Key Laboratory of Protein Science | Director Zhixin Wang Deputy director Yongzhang Luo, Xinquan Wang |
| The Ministry of Education Key Laboratory of Bioinformatics | Director Haiteng Deng Deputy director Xuegong Zhang (Department of Automation), Haipeng Gong, Zhi Lu |
| Beijing Key Laboratory for Protein Therapeutics | Director Yongzhang Luo |
| Beijing Advanced Innovation Center For Structural Biology | Director Yigong Shi |
| Beijing Frontier Research Center For Biological Structure | Director Yigong Shi |
| IDG/McGovern Institute for Brain Research at Tsinghua University | Director Songhai Shi |
| Center for Synthetic and Systems Biology, Tsinghua University | Director Guoqiang Chen Deputy director Xuegong Zhang (Department of Automation), Chun Li (Department of Chemical Engineering) |
| Center for Laboratory Training in Life Sciences | Director Dong Liu |
| Center for Plant Biology | Director Yijun Qi |
| Marine Biotechnology Institute | Director Rongqing Zhang |